Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
yesWRhamnogalacturonan endolyase YesW precursor. (634 aa)    
Predicted Functional Partners:
rhgT_2
Rhamnogalacturonan acetylesterase RhgT.
 
 
   0.945
pelA_2
Pectate trisaccharide-lyase precursor.
  
  
 0.865
pemA_1
Pectinesterase A precursor.
  
  
 0.779
xynD_2
Arabinoxylan arabinofuranohydrolase precursor; Belongs to the glycosyl hydrolase 43 family.
  
    0.728
rhgT_1
Rhamnogalacturonan acetylesterase RhgT.
  
 
   0.726
pemA_2
Pectinesterase A precursor.
  
  
 0.725
T45_06518
Hypothetical protein.
  
    0.717
pelX
Pectate disaccharide-lyase precursor.
  
  
  0.715
pemA_3
Pectinesterase A precursor.
  
  
 0.708
xynB_5
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
  
    0.688
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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