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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_04868long-chain-fatty-acid--CoA ligase FadD15. (608 aa)    
Predicted Functional Partners:
dhbF_8
Dimodular nonribosomal peptide synthase.
  
 
0.911
barA_2
Signal transduction histidine-protein kinase.
  
 
  0.803
T45_00539
long-chain-fatty-acid--CoA ligase FadD15.
  
  
 
0.761
T45_06351
Phenolphthiocerol synthesis polyketide synthase type I Pks15/1.
    
 0.751
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
  0.750
estB_2
Extracellular esterase EstB precursor.
     
 0.731
baiB
Bile acid-coenzyme A ligase.
 
 
  0.723
pksN
Polyketide synthase PksN; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
    
 0.700
lcfB_6
long-chain-fatty-acid--CoA ligase.
 
 
  0.698
T45_05201
long-chain-fatty-acid--CoA ligase FadD13.
 
 
 
0.698
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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