Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ytfQ_2ABC transporter periplasmic-binding protein YtfQ. (349 aa)    
Predicted Functional Partners:
rbsC_5
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.996
araG_3
Arabinose import ATP-binding protein AraG.
 
 0.980
barA_2
Signal transduction histidine-protein kinase.
   
 0.972
yjfF_1
Inner membrane ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.962
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
   
 0.953
alsC
D-allose transport system permease protein AlsC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.948
rbsC_3
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.944
rbsB_5
D-ribose-binding periplasmic protein precursor; Belongs to the binding-protein-dependent transport system permease family.
 
0.934
ytfT_1
Inner membrane ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.922
rbsC_4
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
 0.919
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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