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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iolE_2Inosose dehydratase. (334 aa)    
Predicted Functional Partners:
ntdC
Glucose-6-phosphate 3-dehydrogenase.
 
 
  0.957
yliI
Soluble aldose sugar dehydrogenase YliI.
     
 0.904
ytfQ_2
ABC transporter periplasmic-binding protein YtfQ.
 
    0.854
fruA
PTS system fructose-specific EIIABC component.
  
 
 0.798
rbsC_5
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
 
    0.775
T45_04885
Trehalose utilization.
       0.752
T45_04892
Xylose isomerase-like TIM barrel.
 
     0.698
T45_04888
Hypothetical protein.
       0.679
afr_1
1,5-anhydro-D-fructose reductase.
 
 
  0.662
stkP_5
Serine/threonine-protein kinase StkP.
      
 0.617
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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