Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
T45_04890Xylose isomerase-like TIM barrel. (389 aa)    
Predicted Functional Partners:
T45_04888
Hypothetical protein.
 
     0.951
T45_04889
TatD related DNase.
 
    0.950
ulaE_2
L-ribulose-5-phosphate 3-epimerase UlaE.
 
     0.944
ino1_2
Inositol-3-phosphate synthase.
 
     0.920
yliI
Soluble aldose sugar dehydrogenase YliI.
 
  
 0.895
T45_04892
Xylose isomerase-like TIM barrel.
 
     0.823
gdhB_1
Quinoprotein glucose dehydrogenase B precursor.
 
  
 0.806
fruA
PTS system fructose-specific EIIABC component.
  
 
  0.800
T45_00407
Hypothetical protein.
 
     0.793
T45_00404
Type I phosphodiesterase / nucleotide pyrophosphatase.
 
     0.792
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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