STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfdB_22,4-dichlorophenol 6-monooxygenase. (579 aa)    
Predicted Functional Partners:
npcC
Hydroxyquinol 1,2-dioxygenase.
 
  
 0.903
bphC_1
Manganese-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase.
    
 0.847
tfdF
Maleylacetate reductase.
 
    0.834
bphC_2
Manganese-dependent 2,3-dihydroxybiphenyl 1,2-dioxygenase.
    
  0.833
T45_07972
Fatty acid hydroxylase superfamily protein.
   
 0.659
dhbF_8
Dimodular nonribosomal peptide synthase.
  
 0.648
pcaH
Protocatechuate 3,4-dioxygenase beta chain.
 
 
 0.601
rebG
4'-demethylrebeccamycin synthase.
   
 
  0.588
oleD
Oleandomycin glycosyltransferase.
   
 
  0.588
pcaG
Protocatechuate 3,4-dioxygenase alpha chain.
 
 
 0.584
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.