Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
T45_04994Thermophilic serine proteinase precursor. (480 aa)    
Predicted Functional Partners:
T45_04995
RNA polymerase sigma factor SigD; Belongs to the sigma-70 factor family. ECF subfamily.
 
     0.939
T45_04993
CHAT domain protein.
 
     0.935
T45_04996
Hypothetical protein.
       0.748
cpt
Carboxypeptidase T precursor.
  
 0.718
T45_03291
Hypothetical protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.654
lieA_2
Leupeptin-inactivating enzyme 1 precursor.
    
 0.636
T45_00801
FtsK/SpoIIIE family protein.
 
 
 0.634
T45_01998
FtsK/SpoIIIE family protein.
 
 
 0.624
eccCa1_2
ESX-1 secretion system protein EccCa1.
 
 
 0.598
eccCb1
ESX-1 secretion system protein EccCb1.
  
 
 0.540
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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