Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
xynAS9_3Endo-1,4-beta-xylanase A precursor. (371 aa)    
Predicted Functional Partners:
manA_1
Mannan endo-1,4-beta-mannosidase precursor.
  
 
0.915
engD
Endoglucanase D precursor; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
 
 0.865
T45_06173
Endoglucanase E1 precursor.
 
 
0.825
xynAS9_4
Endo-1,4-beta-xylanase A precursor.
 
 
0.811
pelA_1
Pectate lyase A precursor.
  
  0.735
pelA_3
Pectate lyase A precursor.
  
  0.714
abfB_1
Extracellular exo-alpha-L-arabinofuranosidase precursor.
  
     0.700
T45_08599
Hypothetical protein.
  
 
   0.695
cex
Exoglucanase/xylanase precursor.
 
 
 
 0.681
pel_1
Pectate lyase precursor.
  
  
  0.671
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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