Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
T45_05008Hypothetical protein. (134 aa)    
Predicted Functional Partners:
T45_05007
TMAO/DMSO reductase.
 
     0.967
T45_05151
Hypothetical protein.
 
     0.723
T45_05152
Mg-protoporphyrin IX methyl transferase.
  
     0.710
wbiB
DTDP-L-rhamnose 4-epimerase.
 
     0.677
T45_05150
Undecaprenyl-phosphate mannosyltransferase.
 
     0.636
T45_05009
Hypothetical protein.
       0.580
T45_06398
Hypothetical protein.
  
     0.556
T45_06528
Hypothetical protein.
  
     0.528
T45_03149
Geranyl diphosphate 2-C-methyltransferase.
  
     0.465
T45_02385
Hypothetical protein.
  
     0.421
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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