T45_05022 protein (Streptomyces turgidiscabies)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

T45_05022

Ferric iron reductase FhuF-like transporter. (247 aa)

Predicted Functional Partners:

glgA_2

0.813

glgC

0.749

T45_05021

0.733

T45_07288

0.564

intPAI

0.550

T45_09233

0.533

T45_02690

0.495

T45_08284

0.480

T45_01277

0.475

T45_05672

0.461

Your Current Organism:

Streptomyces turgidiscabies

NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
T45_01277	T45_05022	T45_01277	T45_05022	Hypothetical protein.	Ferric iron reductase FhuF-like transporter.	0.475
T45_01277	T45_07288	T45_01277	T45_07288	Hypothetical protein.	Hypothetical protein.	0.633
T45_02690	T45_05022	T45_02690	T45_05022	Zinc carboxypeptidase.	Ferric iron reductase FhuF-like transporter.	0.495
T45_02690	T45_05672	T45_02690	T45_05672	Zinc carboxypeptidase.	Hypothetical protein.	0.421
T45_02690	T45_07288	T45_02690	T45_07288	Zinc carboxypeptidase.	Hypothetical protein.	0.748
T45_02690	intPAI	T45_02690	T45_06326	Zinc carboxypeptidase.	Hypothetical protein; Belongs to the 'phage' integrase family.	0.740
T45_05021	T45_05022	T45_05021	T45_05022	Hypothetical protein.	Ferric iron reductase FhuF-like transporter.	0.733
T45_05021	glgA_2	T45_05021	T45_05023	Hypothetical protein.	Capsular glucan synthase.	0.492
T45_05021	glgC	T45_05021	T45_05024	Hypothetical protein.	Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	0.704
T45_05022	T45_01277	T45_05022	T45_01277	Ferric iron reductase FhuF-like transporter.	Hypothetical protein.	0.475
T45_05022	T45_02690	T45_05022	T45_02690	Ferric iron reductase FhuF-like transporter.	Zinc carboxypeptidase.	0.495
T45_05022	T45_05021	T45_05022	T45_05021	Ferric iron reductase FhuF-like transporter.	Hypothetical protein.	0.733
T45_05022	T45_05672	T45_05022	T45_05672	Ferric iron reductase FhuF-like transporter.	Hypothetical protein.	0.461
T45_05022	T45_07288	T45_05022	T45_07288	Ferric iron reductase FhuF-like transporter.	Hypothetical protein.	0.564
T45_05022	T45_08284	T45_05022	T45_08284	Ferric iron reductase FhuF-like transporter.	MarR family protein.	0.480
T45_05022	T45_09233	T45_05022	T45_09233	Ferric iron reductase FhuF-like transporter.	Hypothetical protein.	0.533
T45_05022	glgA_2	T45_05022	T45_05023	Ferric iron reductase FhuF-like transporter.	Capsular glucan synthase.	0.813
T45_05022	glgC	T45_05022	T45_05024	Ferric iron reductase FhuF-like transporter.	Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.	0.749
T45_05022	intPAI	T45_05022	T45_06326	Ferric iron reductase FhuF-like transporter.	Hypothetical protein; Belongs to the 'phage' integrase family.	0.550
T45_05672	T45_02690	T45_05672	T45_02690	Hypothetical protein.	Zinc carboxypeptidase.	0.421