Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
fdh_3D-threo-aldose 1-dehydrogenase. (345 aa)    
Predicted Functional Partners:
T45_05043
Amidohydrolase.
  
  0.985
T45_08466
Amidohydrolase.
  
  0.933
xecE
2-(S-hydroxypropyl-CoM dehydrogenase.
 
     0.909
T45_05039
L-fuconate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
     0.894
rhaM_3
L-rhamnose mutarotase.
 
     0.865
rbsB_4
D-ribose-binding periplasmic protein precursor.
 
     0.691
rbsC_6
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
       0.637
ywqF
UDP-glucose 6-dehydrogenase YwqF.
   
 
  0.624
rbsA_5
Ribose import ATP-binding protein RbsA.
       0.623
kdgK_5
2-dehydro-3-deoxygluconokinase.
     
  0.617
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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