STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmr_1Cyclic di-GMP phosphodiesterase Gmr. (714 aa)    
Predicted Functional Partners:
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 0.999
barA_2
Signal transduction histidine-protein kinase.
  
 0.999
gmr_2
Cyclic di-GMP phosphodiesterase Gmr.
 
0.999
T45_09072
Sensory histidine kinase AtoS.
  
 0.996
yeaP
Putative diguanylate cyclase YeaP.
 
0.989
cph2_1
Phytochrome-like protein cph2.
 
0.971
rsbP_1
Phosphoserine phosphatase RsbP.
 
 0.950
rsbU_3
Phosphoserine phosphatase RsbU.
  
 0.925
T45_07062
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
 0.925
T45_01411
Sensory histidine kinase AtoS.
 
 0.884
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.