STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_05496Type I phosphodiesterase / nucleotide pyrophosphatase. (462 aa)    
Predicted Functional Partners:
T45_05495
Xylose isomerase-like TIM barrel.
 
     0.951
T45_05494
TatD related DNase.
 
   
 0.949
T45_05491
Prenyltransferase.
 
   
 0.908
T45_05493
Hypothetical protein.
 
     0.906
ulaE_3
L-ribulose-5-phosphate 3-epimerase UlaE.
 
     0.893
ino1_3
Inositol-3-phosphate synthase.
 
     0.857
T45_04888
Hypothetical protein.
 
     0.807
T45_00407
Hypothetical protein.
 
     0.806
yliI
Soluble aldose sugar dehydrogenase YliI.
 
     0.801
gdhB_1
Quinoprotein glucose dehydrogenase B precursor.
 
     0.796
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.