Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
barA_2 | degU_17 | T45_05328 | T45_07540 | Signal transduction histidine-protein kinase. | Transcriptional regulatory protein DegU. | 0.992 |
barA_2 | liaR_18 | T45_05328 | T45_09051 | Signal transduction histidine-protein kinase. | Transcriptional regulatory protein LiaR. | 0.992 |
barA_2 | liaR_2 | T45_05328 | T45_02181 | Signal transduction histidine-protein kinase. | Transcriptional regulatory protein LiaR. | 0.992 |
barA_2 | liaR_4 | T45_05328 | T45_03395 | Signal transduction histidine-protein kinase. | Transcriptional regulatory protein LiaR. | 0.992 |
barA_2 | luxQ | T45_05328 | T45_00537 | Signal transduction histidine-protein kinase. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.999 |
barA_2 | narX_4 | T45_05328 | T45_07539 | Signal transduction histidine-protein kinase. | Nitrate/nitrite sensor protein NarX. | 0.930 |
barA_2 | nreC_3 | T45_05328 | T45_03905 | Signal transduction histidine-protein kinase. | Oxygen regulatory protein NreC. | 0.992 |
barA_2 | nreC_4 | T45_05328 | T45_05071 | Signal transduction histidine-protein kinase. | Oxygen regulatory protein NreC. | 0.992 |
barA_2 | vraR_2 | T45_05328 | T45_00917 | Signal transduction histidine-protein kinase. | Response regulator protein VraR. | 0.992 |
barA_2 | vraR_7 | T45_05328 | T45_06301 | Signal transduction histidine-protein kinase. | Response regulator protein VraR. | 0.992 |
degU_17 | barA_2 | T45_07540 | T45_05328 | Transcriptional regulatory protein DegU. | Signal transduction histidine-protein kinase. | 0.992 |
degU_17 | luxQ | T45_07540 | T45_00537 | Transcriptional regulatory protein DegU. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.918 |
degU_17 | narX_4 | T45_07540 | T45_07539 | Transcriptional regulatory protein DegU. | Nitrate/nitrite sensor protein NarX. | 0.979 |
liaR_18 | barA_2 | T45_09051 | T45_05328 | Transcriptional regulatory protein LiaR. | Signal transduction histidine-protein kinase. | 0.992 |
liaR_18 | luxQ | T45_09051 | T45_00537 | Transcriptional regulatory protein LiaR. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.918 |
liaR_18 | narX_4 | T45_09051 | T45_07539 | Transcriptional regulatory protein LiaR. | Nitrate/nitrite sensor protein NarX. | 0.813 |
liaR_2 | barA_2 | T45_02181 | T45_05328 | Transcriptional regulatory protein LiaR. | Signal transduction histidine-protein kinase. | 0.992 |
liaR_2 | luxQ | T45_02181 | T45_00537 | Transcriptional regulatory protein LiaR. | Autoinducer 2 sensor kinase/phosphatase LuxQ. | 0.918 |
liaR_2 | narX_4 | T45_02181 | T45_07539 | Transcriptional regulatory protein LiaR. | Nitrate/nitrite sensor protein NarX. | 0.809 |
liaR_4 | barA_2 | T45_03395 | T45_05328 | Transcriptional regulatory protein LiaR. | Signal transduction histidine-protein kinase. | 0.992 |
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