Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
T45_05824 | T45_08315 | T45_05824 | T45_08315 | Hypothetical protein. | MerR family regulatory protein. | 0.678 |
T45_08314 | T45_08315 | T45_08314 | T45_08315 | Hypothetical protein. | MerR family regulatory protein. | 0.608 |
T45_08315 | T45_05824 | T45_08315 | T45_05824 | MerR family regulatory protein. | Hypothetical protein. | 0.678 |
T45_08315 | T45_08314 | T45_08315 | T45_08314 | MerR family regulatory protein. | Hypothetical protein. | 0.608 |
T45_08315 | T45_09072 | T45_08315 | T45_09072 | MerR family regulatory protein. | Sensory histidine kinase AtoS. | 0.599 |
T45_08315 | accA | T45_08315 | T45_00189 | MerR family regulatory protein. | Acetyl-coenzyme A carboxylase carboxyl. | 0.823 |
T45_08315 | cph2_2 | T45_08315 | T45_04210 | MerR family regulatory protein. | Phytochrome-like protein cph2. | 0.628 |
T45_08315 | gltB_1 | T45_08315 | T45_04042 | MerR family regulatory protein. | Glutamate synthase [NADPH] large chain. | 0.819 |
T45_08315 | gmr_1 | T45_08315 | T45_05060 | MerR family regulatory protein. | Cyclic di-GMP phosphodiesterase Gmr. | 0.628 |
T45_08315 | rpoB_1 | T45_08315 | T45_07178 | MerR family regulatory protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.643 |
T45_08315 | rpoC | T45_08315 | T45_07177 | MerR family regulatory protein. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.596 |
T45_08315 | rpoZ | T45_08315 | T45_08441 | MerR family regulatory protein. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.597 |
T45_09072 | T45_08315 | T45_09072 | T45_08315 | Sensory histidine kinase AtoS. | MerR family regulatory protein. | 0.599 |
T45_09072 | cph2_2 | T45_09072 | T45_04210 | Sensory histidine kinase AtoS. | Phytochrome-like protein cph2. | 0.996 |
T45_09072 | gltB_1 | T45_09072 | T45_04042 | Sensory histidine kinase AtoS. | Glutamate synthase [NADPH] large chain. | 0.537 |
T45_09072 | gmr_1 | T45_09072 | T45_05060 | Sensory histidine kinase AtoS. | Cyclic di-GMP phosphodiesterase Gmr. | 0.996 |
accA | T45_08315 | T45_00189 | T45_08315 | Acetyl-coenzyme A carboxylase carboxyl. | MerR family regulatory protein. | 0.823 |
accA | gltB_1 | T45_00189 | T45_04042 | Acetyl-coenzyme A carboxylase carboxyl. | Glutamate synthase [NADPH] large chain. | 0.614 |
accA | rpoB_1 | T45_00189 | T45_07178 | Acetyl-coenzyme A carboxylase carboxyl. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.489 |
accA | rpoC | T45_00189 | T45_07177 | Acetyl-coenzyme A carboxylase carboxyl. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.418 |
page 1 of 3