STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
rutA_3Pyrimidine monooxygenase RutA; Catalyzes the pyrimidine ring opening between N-3 and C-4 by an unusual flavin hydroperoxide-catalyzed mechanism to yield ureidoacrylate peracid. It cleaves pyrmidine rings directly by adding oxygen atoms, making a toxic ureidoacrylate peracid product which can be spontaneously reduced to ureidoacrylate. (360 aa)    
Predicted Functional Partners:
nicF_2
Maleamate amidohydrolase.
 
 
  0.897
pyrR
Bifunctional protein PyrR; Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant.
    
  0.854
dhbF_8
Dimodular nonribosomal peptide synthase.
   
 0.826
ssuD_1
Alkanesulfonate monooxygenase.
  
     0.753
ssuE
FMN reductase (NADPH).
 
  0.738
ntaA_2
Nitrilotriacetate monooxygenase component A.
  
    0.724
lgrD_2
Linear gramicidin synthase subunit D.
   
 0.680
ssuA_4
Putative aliphatic sulfonates-binding protein precursor.
 
 
  0.646
ssuC_2
Putative aliphatic sulfonates transport permease protein SsuC.
 
 
 0.616
ntaA_3
Nitrilotriacetate monooxygenase component A.
  
    0.609
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
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