STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
T45_08951Putative diguanylate cyclase. (326 aa)    
Predicted Functional Partners:
barA_2
Signal transduction histidine-protein kinase.
 
 
 0.920
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
 
 0.833
T45_09072
Sensory histidine kinase AtoS.
 
 
 0.828
T45_08950
Hypothetical protein.
  
    0.650
rsbU_15
Phosphoserine phosphatase RsbU.
 
  0.637
pleD
Response regulator PleD.
  
 
  0.634
T45_08603
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
   0.621
rsbU_4
Phosphoserine phosphatase RsbU.
 
  0.617
T45_08210
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
   0.615
rsbU_17
Phosphoserine phosphatase RsbU.
 
  0.611
Your Current Organism:
Streptomyces turgidiscabies
NCBI taxonomy Id: 85558
Other names: ATCC 700248, CIP 105577, IFO 16080, JCM 10429, NBRC 16080, NRRL B-24078, S. turgidiscabies, strain SY9113
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.