STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARR50656.1Dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (131 aa)    
Predicted Functional Partners:
ARR48360.1
ADP-ribose diphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.813
ARR48362.1
Esterase YqiA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.752
ARR48361.1
Phosphodiesterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.727
ARR50964.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.629
ARR49864.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.549
ARR49823.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.531
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes); Belongs to the ribosome modulation factor family.
  
     0.504
ARR50123.1
Anti-sigma E factor; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.489
ARR50243.1
Anti-sigma B factor antagonist; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.484
parE
DNA topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily.
       0.463
Your Current Organism:
Photobacterium damselae
NCBI taxonomy Id: 85581
Other names: Listonella damsela, Listonella damselae, P. damselae subsp. damselae, Photobacterium damsela subsp. damsela, Photobacterium damselae subsp. damselae, Photobacterium histaminum, Vibrio damsela, Vibrio damselae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.