STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARR48933.1Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (475 aa)    
Predicted Functional Partners:
ARR51391.1
Alpha,alpha-phosphotrehalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.845
ARR48935.1
Beta-galactosidase subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.745
ARR48925.1
L-alanine exporter AlaE; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.491
ARR49179.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.489
ARR48698.1
Porin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.486
ARR48934.1
Amino acid permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    
0.486
ARR50681.1
Bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.485
ARR50422.1
3-deoxy-D-manno-octulosonic acid kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.483
ARR48932.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.478
ARR49498.1
DedA family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.468
Your Current Organism:
Photobacterium damselae
NCBI taxonomy Id: 85581
Other names: Listonella damsela, Listonella damselae, P. damselae subsp. damselae, Photobacterium damsela subsp. damsela, Photobacterium damselae subsp. damselae, Photobacterium histaminum, Vibrio damsela, Vibrio damselae
Server load: medium (42%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.