STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARR49223.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)    
Predicted Functional Partners:
ARR49109.1
Chitinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 
 0.891
ARR49097.1
Wax ester/triacylglycerol synthase family O-acyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.722
ARR49237.1
Short chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.694
ARR48298.1
TIGR03899 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.660
ARR49224.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
0.639
ARR49100.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.589
ARR49236.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.547
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.511
ARR49503.1
PilZ domain-containing protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.510
ARR49974.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.501
Your Current Organism:
Photobacterium damselae
NCBI taxonomy Id: 85581
Other names: Listonella damsela, Listonella damselae, P. damselae subsp. damselae, Photobacterium damsela subsp. damsela, Photobacterium damselae subsp. damselae, Photobacterium histaminum, Vibrio damsela, Vibrio damselae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.