STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARR49559.1Lipopolysaccharide assembly protein LapB; Derived by automated computational analysis using gene prediction method: Protein Homology. (389 aa)    
Predicted Functional Partners:
lapA
Hypothetical protein; Involved in the assembly of lipopolysaccharide (LPS). Belongs to the LapA family.
 
  
 0.915
ARR49420.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.852
ARR49770.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.828
ARR50107.1
Cell division protein FtsB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.584
ihfB
Integration host factor subunit beta; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family.
       0.506
ARR49558.1
Orotidine-5'-phosphate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.499
ARR48612.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.479
ARR48324.1
LPS assembly protein LptD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.454
ARR49826.1
Cell division protein DedD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.434
ARR51501.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.434
Your Current Organism:
Photobacterium damselae
NCBI taxonomy Id: 85581
Other names: Listonella damsela, Listonella damselae, P. damselae subsp. damselae, Photobacterium damsela subsp. damsela, Photobacterium damselae subsp. damselae, Photobacterium histaminum, Vibrio damsela, Vibrio damselae
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