STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARR50281.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)    
Predicted Functional Partners:
ARR50283.1
Pilus (MSHA type) biogenesis protein MshL; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.950
htpG
Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.
   
 0.938
ARR50285.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.934
ARR50346.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.931
ARR50284.1
MSHA biogenesis protein MshJ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.925
ARR50277.1
MSHA biogenesis protein MshB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.916
ARR50276.1
MSHA biogenesis protein MshA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.904
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.903
ARR50302.1
LPS biosynthesis sugar transferase SypR; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.892
ARR50273.1
Type IV prepilin, MshO; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.882
Your Current Organism:
Photobacterium damselae
NCBI taxonomy Id: 85581
Other names: Listonella damsela, Listonella damselae, P. damselae subsp. damselae, Photobacterium damsela subsp. damsela, Photobacterium damselae subsp. damselae, Photobacterium histaminum, Vibrio damsela, Vibrio damselae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.