STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARR50523.1Potassium transporter; Low-affinity potassium transport system. Interacts with Trk system potassium uptake protein TrkA; Belongs to the TrkH potassium transport family. (485 aa)    
Predicted Functional Partners:
trkA
Trk system potassium transport protein TrkA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.955
ARR50522.1
Protoporphyrinogen oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
ARR50524.1
YigZ family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.674
ARR48821.1
Potassium transporter Kef; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.637
ARR49427.1
Potassium channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.476
ARR50750.1
Voltage-gated potassium channel; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.476
ARR51650.1
Potassium transporter KtrA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.476
fadA
acetyl-CoA C-acyltransferase FadA; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
     
 0.449
ARR50525.1
Fatty acid oxidation complex subunit alpha FadB; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.442
ARR49765.1
Pyruvate:ferredoxin (flavodoxin) oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.432
Your Current Organism:
Photobacterium damselae
NCBI taxonomy Id: 85581
Other names: Listonella damsela, Listonella damselae, P. damselae subsp. damselae, Photobacterium damsela subsp. damsela, Photobacterium damselae subsp. damselae, Photobacterium histaminum, Vibrio damsela, Vibrio damselae
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