Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ARR50983.1Type I-F CRISPR-associated endoribonuclease Cas6/Csy4; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa)    
Predicted Functional Partners:
ARR50979.1
Type I-F CRISPR-associated helicase Cas3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.998
ARR50982.1
Type I-F CRISPR-associated protein Csy3; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.995
ARR50981.1
Type I-F CRISPR-associated protein Csy2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.992
ARR50980.1
Type I-F CRISPR-associated protein Csy1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.991
ARR50978.1
Subtype I-F CRISPR-associated endonuclease Cas1; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.973
ARR49384.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.403
Your Current Organism:
Photobacterium damselae
NCBI taxonomy Id: 85581
Other names: Listonella damsela, Listonella damselae, P. damselae subsp. damselae, Photobacterium damsela subsp. damsela, Photobacterium damselae subsp. damselae, Photobacterium histaminum, Vibrio damsela, Vibrio damselae
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