STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACK55057.1PFAM: Positive regulator of sigma(E) RseC/MucC; KEGG: eba:ebA5468 positive regulator of sigma(E). (155 aa)    
Predicted Functional Partners:
ACK55058.1
PFAM: MucB/RseB family protein; KEGG: azo:azo1632 putative sigma factor regulatory protein.
 
  
 0.985
ACK55059.1
PFAM: Anti sigma-E protein RseA family protein; KEGG: eba:ebA5464 anti sigma-E protein.
 
  
 0.912
ACK55060.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor RpoE; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: eba:ebA5463 RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily.
  
  
 0.842
ACK55056.1
Protease Do; KEGG: azo:azo1634 serine protease MucD; TIGRFAM: protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; Belongs to the peptidase S1C family.
  
  
 0.839
ACK55055.1
PFAM: glutaredoxin 2; KEGG: azo:azo1635 thioredoxin-disulfide reductase.
     
 0.835
ACK54305.1
KEGG: eba:ebA1048 hypothetical protein.
  
     0.734
lepA
GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.674
ACK54713.1
KEGG: azo:azo1496 hypothetical protein.
  
     0.666
ACR01663.1
KEGG: azo:azo1044 hypothetical protein.
  
     0.652
ACK54710.1
PFAM: SMC domain protein; KEGG: azo:azo1494 hypothetical protein.
  
     0.609
Your Current Organism:
Thauera sp. MZ1T
NCBI taxonomy Id: 85643
Other names: T. sp. MZ1T
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