Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
MICA_108Type I secretion outer membrane, TolC family protein. (468 aa)    
Predicted Functional Partners:
MICA_111
Type I secretion membrane fusion, HlyD family protein.
 
 
 0.935
MICA_1875
Type I secretion membrane fusion, HlyD family protein.
 
 
 0.906
MICA_1221
Type I secretion membrane fusion, HlyD family protein.
 
 
 0.905
MICA_110
Toxin secretion ATP-binding protein.
 
  
 0.882
MICA_107
Hemolysin-type calcium-binding repeat family protein.
 
    0.854
macB
ABC transporter family protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.830
MICA_1876
Toxin secretion ATP-binding protein.
 
  
 0.823
MICA_1220
ABC transporter transmembrane region family protein.
 
  
 0.818
MICA_1219
ABC transporter transmembrane region family protein.
 
  
 0.813
MICA_2354
Putative uncharacterized domain protein.
 
   
 0.786
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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