Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MICA_152Diguanylate cyclase domain protein. (726 aa)    
Predicted Functional Partners:
MICA_1929
His Kinase A domain protein.
  
 0.936
MICA_900
Sensory box protein.
  
 0.920
MICA_740
EAL domain protein.
 
  
 0.820
MICA_959
Diguanylate cyclase domain protein.
 
 
0.812
MICA_1527
HD domain protein.
 
  
 0.775
MICA_1972
His Kinase A domain protein.
 
  
 0.770
MICA_1068
Diguanylate cyclase domain protein.
 
   
 0.754
MICA_61
His Kinase A domain protein.
  
 0.749
MICA_1695
Sensory box protein.
  
 
 0.708
MICA_210
Cyclic nucleotide-binding domain protein.
 
  
0.649
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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