Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MICA_166Conserved hypothetical protein. (232 aa)    
Predicted Functional Partners:
MICA_167
ostA-like family protein.
 
   
 0.956
MICA_156
ABC transporter family protein.
 
  
  0.936
MICA_165
Conserved hypothetical protein.
       0.773
MICA_164
Sugar isomerase, KpsF/GutQ family protein; Belongs to the SIS family. GutQ/KpsF subfamily.
       0.767
MICA_41
Putative uncharacterized protein.
  
     0.729
MICA_163
3'-5' exonuclease family protein.
       0.662
lptD
Organic solvent tolerance family protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
     0.660
MICA_994
smpA / OmlA family protein.
  
     0.646
dinG
ATP-dependent DNA helicase.
  
     0.643
MICA_2090
Putative uncharacterized protein.
  
     0.628
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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