MICA_1845 protein (Micavibrio aeruginosavorus ARL13)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

MICA_1845

Head-to-tail joining protein. (534 aa)

Predicted Functional Partners:

MICA_1839

0.835

MICA_1849

0.830

MICA_1838

0.816

MICA_1841

0.812

MICA_1833

0.799

MICA_1846

0.773

MICA_1844

0.767

MICA_1835

0.720

MICA_1847

0.713

MICA_1848

0.712

Your Current Organism:

Micavibrio aeruginosavorus ARL13

NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

page 1 of 4

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About

node1	node2	node1 annotation	node2 annotation	score
MICA_1833	MICA_1835	Putative uncharacterized protein; Overlaps another CDS with the same product name.	Putative uncharacterized protein.	0.934
MICA_1833	MICA_1838	Putative uncharacterized protein; Overlaps another CDS with the same product name.	Putative uncharacterized protein; Overlaps another CDS with the same product name.	0.871
MICA_1833	MICA_1839	Putative uncharacterized protein; Overlaps another CDS with the same product name.	Putative uncharacterized protein; Overlaps another CDS with the same product name.	0.868
MICA_1833	MICA_1841	Putative uncharacterized protein; Overlaps another CDS with the same product name.	Putative uncharacterized protein.	0.839
MICA_1833	MICA_1845	Putative uncharacterized protein; Overlaps another CDS with the same product name.	Head-to-tail joining protein.	0.799
MICA_1833	MICA_1849	Putative uncharacterized protein; Overlaps another CDS with the same product name.	Peptidase S24.	0.748
MICA_1835	MICA_1833	Putative uncharacterized protein.	Putative uncharacterized protein; Overlaps another CDS with the same product name.	0.934
MICA_1835	MICA_1838	Putative uncharacterized protein.	Putative uncharacterized protein; Overlaps another CDS with the same product name.	0.866
MICA_1835	MICA_1839	Putative uncharacterized protein.	Putative uncharacterized protein; Overlaps another CDS with the same product name.	0.865
MICA_1835	MICA_1841	Putative uncharacterized protein.	Putative uncharacterized protein.	0.823
MICA_1835	MICA_1845	Putative uncharacterized protein.	Head-to-tail joining protein.	0.720
MICA_1835	MICA_1849	Putative uncharacterized protein.	Peptidase S24.	0.506
MICA_1838	MICA_1833	Putative uncharacterized protein; Overlaps another CDS with the same product name.	Putative uncharacterized protein; Overlaps another CDS with the same product name.	0.871
MICA_1838	MICA_1835	Putative uncharacterized protein; Overlaps another CDS with the same product name.	Putative uncharacterized protein.	0.866
MICA_1838	MICA_1839	Putative uncharacterized protein; Overlaps another CDS with the same product name.	Putative uncharacterized protein; Overlaps another CDS with the same product name.	0.956
MICA_1838	MICA_1841	Putative uncharacterized protein; Overlaps another CDS with the same product name.	Putative uncharacterized protein.	0.879
MICA_1838	MICA_1845	Putative uncharacterized protein; Overlaps another CDS with the same product name.	Head-to-tail joining protein.	0.816
MICA_1838	MICA_1849	Putative uncharacterized protein; Overlaps another CDS with the same product name.	Peptidase S24.	0.688
MICA_1839	MICA_1833	Putative uncharacterized protein; Overlaps another CDS with the same product name.	Putative uncharacterized protein; Overlaps another CDS with the same product name.	0.868
MICA_1839	MICA_1835	Putative uncharacterized protein; Overlaps another CDS with the same product name.	Putative uncharacterized protein.	0.865