Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MICA_194vacJ like lipofamily protein. (249 aa)    
Predicted Functional Partners:
MICA_195
Toluene tolerance, Ttg2 family protein.
 
 
 
 0.961
MICA_2333
Mce related family protein.
 
   
 0.859
MICA_2299
Conserved hypothetical protein.
 
   
 0.712
MICA_2298
ABC transporter family protein.
 
   
 0.679
MICA_43
Hypothetical protein.
 
 
 
 0.679
MICA_44
Hypothetical protein.
 
 
 
 0.677
MICA_192
Conserved hypothetical protein.
 
   
 0.535
yfiO
Conserved hypothetical protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.472
MICA_193
Conserved hypothetical protein.
     
 0.455
MICA_2267
DSBA-like thioredoxin domain protein.
 
  
 0.411
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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