STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MICA_1949Helix-turn-helix family protein. (218 aa)    
Predicted Functional Partners:
MICA_1950
Hypothetical protein.
       0.773
MICA_1948
Hypothetical protein.
       0.648
MICA_2455
Transcriptional regulator, XRE family.
  
     0.617
MICA_1951
Hypothetical protein.
       0.572
MICA_201
hipA N-terminal domain protein.
  
 
 0.482
MICA_1480
Hypothetical protein.
    
 
 0.456
MICA_212
Prepilin-type N-terminal cleavage/methylation domain protein.
  
     0.408
MICA_1468
Putative uncharacterized domain protein.
  
     0.400
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.