Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MICA_2000Transcriptional regulator, XRE family domain protein. (100 aa)    
Predicted Functional Partners:
MICA_1957
Conserved hypothetical protein.
  
     0.613
MICA_1119
Helix-turn-helix family protein.
  
     0.607
MICA_2051
Helix-turn-helix family protein.
  
     0.560
MICA_947
Phasin family domain protein.
  
     0.560
MICA_1490
Putative uncharacterized protein.
  
     0.513
MICA_1454
Methyltransferase domain protein.
  
     0.502
ftsQ
Cell division FtsQ family protein; Essential cell division protein; Belongs to the FtsQ/DivIB family. FtsQ subfamily.
  
     0.484
MICA_785
Bacterial regulatory s, tetR family protein.
  
     0.468
mreD
Rod shape-determining protein MreD.
  
     0.465
MICA_965
asmA family protein.
  
     0.454
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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