Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
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[Homology]
Score
MICA_233Putative membrane protein. (716 aa)    
Predicted Functional Partners:
MICA_232
ahpC/TSA family protein.
 
   
 0.946
MICA_1442
ahpC/TSA family protein.
  
 
 0.867
MICA_1815
Periplasmic thiol:disulfide oxidoreductase, DsbE family protein.
  
 
 0.867
MICA_846
NHL repeat family protein.
  
 
 0.867
msrB
methionine-R-sulfoxide reductase.
   
 
 0.822
msrA
methionine-S-sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
   
 
 0.795
groL
Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
  
  
 0.674
MICA_2267
DSBA-like thioredoxin domain protein.
 
 
 0.646
MICA_1192
Conserved hypothetical protein.
  
    0.641
trx
Thioredoxin; Belongs to the thioredoxin family.
   
 
 0.617
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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