Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MICA_239Peptidase M23 family protein. (515 aa)    
Predicted Functional Partners:
MICA_1190
Peptidase M23 family protein.
 
   
 0.671
MICA_2295
Penicillin-binding, 1A family protein.
  
   
 0.663
MICA_814
Penicillin-binding, 1A family protein.
  
   
 0.615
MICA_238
Hypothetical protein.
       0.572
lepB
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.564
MICA_1765
Conserved hypothetical protein.
     
 0.547
MICA_53
Peptidase M23 family protein.
  
   
 0.543
MICA_632
Sporulation related domain protein.
 
  
 0.505
MICA_1178
Conserved hypothetical protein.
 
 
   0.490
MICA_199
Peptidase M50 family protein.
 
 
 0.482
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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