Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MICA_266D(-)-3-hydroxybutyrate dehydrogenase. (262 aa)    
Predicted Functional Partners:
hmgCL
hydroxymethylglutaryl-CoA lyase.
   
 
 0.921
MICA_234
acetoacetate-CoA ligase.
   
 0.912
MICA_2383
enoyl-CoA hydratase/isomerase family protein.
  
 0.578
MICA_76
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.532
MICA_267
Hypothetical protein.
       0.531
fabD
Malonyl CoA-acyl carrier protein transacylase.
 
 
 0.529
MICA_817
maeB.
  
 
 0.519
MICA_2393
Ankyrin repeat family protein.
   
 0.497
phaZ
Polyhydroxyalkanoate depolymerase, intracellular family protein.
  
   
 0.457
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 
 0.402
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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