Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MICA_290Bacterial regulatory s, luxR family protein. (249 aa)    
Predicted Functional Partners:
MICA_1929
His Kinase A domain protein.
  
 
 0.943
MICA_1972
His Kinase A domain protein.
  
 
 0.918
MICA_900
Sensory box protein.
  
 
 0.865
MICA_1999
Autoinducer synthetase family protein.
 
  
 0.802
MICA_467
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein.
  
 
 0.745
MICA_289
Bacterial regulatory s, luxR family protein.
 
    
0.726
MICA_288
Putative uncharacterized protein.
       0.714
MICA_1695
Sensory box protein.
  
 
 0.692
MICA_61
His Kinase A domain protein.
  
 
 0.691
MICA_2188
His Kinase A domain protein.
  
 
 0.494
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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