Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MICA_338Heparinase II/III-like family protein. (546 aa)    
Predicted Functional Partners:
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
      0.756
MICA_59
Acetyltransferase family protein.
  
     0.738
MICA_243
Conserved hypothetical protein.
  
     0.660
MICA_2398
Hypothetical protein.
  
     0.659
MICA_1490
Putative uncharacterized protein.
  
     0.620
MICA_452
Conserved hypothetical protein.
  
     0.608
MICA_1468
Putative uncharacterized domain protein.
  
     0.581
MICA_1317
Hypothetical protein.
 
     0.473
clcD
Carboxymethylenebutenolidase.
  
     0.453
MICA_2434
Hypothetical protein.
  
     0.445
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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