der protein (Micavibrio aeruginosavorus ARL13)

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der

Small GTP-binding domain protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (475 aa)

Predicted Functional Partners:

cmk

0.985

MICA_348

0.950

rplA

0.938

gpsA

0.936

dnaG

0.920

MICA_216

0.907

rplT

0.901

rplO

0.887

rplM

0.875

rplB

0.868

Your Current Organism:

Micavibrio aeruginosavorus ARL13

NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MICA_216	cmk	MICA_216	MICA_146	Conserved hypothetical protein; Belongs to the pseudouridine synthase RsuA family.	Cytidylate kinase.	0.895
MICA_216	der	MICA_216	MICA_347	Conserved hypothetical protein; Belongs to the pseudouridine synthase RsuA family.	Small GTP-binding domain protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	0.907
MICA_216	rplM	MICA_216	MICA_1027	Conserved hypothetical protein; Belongs to the pseudouridine synthase RsuA family.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.510
MICA_216	rplT	MICA_216	MICA_2238	Conserved hypothetical protein; Belongs to the pseudouridine synthase RsuA family.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.595
MICA_348	der	MICA_348	MICA_347	PQQ enzyme repeat family protein.	Small GTP-binding domain protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	0.950
cmk	MICA_216	MICA_146	MICA_216	Cytidylate kinase.	Conserved hypothetical protein; Belongs to the pseudouridine synthase RsuA family.	0.895
cmk	der	MICA_146	MICA_347	Cytidylate kinase.	Small GTP-binding domain protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	0.985
cmk	gpsA	MICA_146	MICA_434	Cytidylate kinase.	Putative NAD-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.411
der	MICA_216	MICA_347	MICA_216	Small GTP-binding domain protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	Conserved hypothetical protein; Belongs to the pseudouridine synthase RsuA family.	0.907
der	MICA_348	MICA_347	MICA_348	Small GTP-binding domain protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	PQQ enzyme repeat family protein.	0.950
der	cmk	MICA_347	MICA_146	Small GTP-binding domain protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	Cytidylate kinase.	0.985
der	dnaG	MICA_347	MICA_1584	Small GTP-binding domain protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	0.920
der	gpsA	MICA_347	MICA_434	Small GTP-binding domain protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	Putative NAD-dependent glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.	0.936
der	rplA	MICA_347	MICA_2151	Small GTP-binding domain protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.938
der	rplB	MICA_347	MICA_2131	Small GTP-binding domain protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.868
der	rplM	MICA_347	MICA_1027	Small GTP-binding domain protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.875
der	rplO	MICA_347	MICA_2115	Small GTP-binding domain protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.887
der	rplT	MICA_347	MICA_2238	Small GTP-binding domain protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.901
dnaG	der	MICA_1584	MICA_347	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Small GTP-binding domain protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.	0.920
dnaG	rplA	MICA_1584	MICA_2151	DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.	Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.	0.638

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