Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MICA_44Hypothetical protein. (365 aa)    
Predicted Functional Partners:
MICA_43
Hypothetical protein.
  
  
 
0.903
MICA_1202
Hypothetical protein.
  
 
 0.765
MICA_526
Hypothetical protein.
  
     0.751
MICA_1970
Hypothetical protein.
  
     0.746
MICA_39
Putative uncharacterized protein.
 
     0.743
MICA_48
Hypothetical protein.
  
     0.739
MICA_515
Putative phospholipid-binding domain protein.
  
     0.725
mreD
Rod shape-determining protein MreD.
  
     0.712
MICA_525
Hypothetical protein.
  
     0.709
MICA_2090
Putative uncharacterized protein.
  
     0.702
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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