Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-expression
Experiments
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[Homology]
Score
MICA_440Rhomboid family protein. (252 aa)    
Predicted Functional Partners:
MICA_1173
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
  
  
 0.680
tatA
Twin arginine-targeting translocase, TatA/E family protein; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
   
 
 0.669
MICA_637
Hypothetical protein.
   
 
 0.627
MICA_1241
N-acetylmuramoyl-L-alanine amidase family protein.
   
   0.615
MICA_354
N-acetylmuramoyl-L-alanine amidase family protein.
   
   0.615
MICA_1230
Pyridoxal-phosphate dependent enzyme family protein.
  
  
 0.549
MICA_441
Aminotransferase class-III family protein; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.549
MICA_181
SPFH domain / Band 7 family protein.
   
 0.428
hflC
hflC protein; HflC and HflK could regulate a protease.
   
 0.402
hflK
hflK protein; HflC and HflK could encode or regulate a protease.
   
 0.402
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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