Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MICA_452Conserved hypothetical protein. (152 aa)    
Predicted Functional Partners:
MICA_616
Conserved hypothetical protein.
  
     0.689
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
     0.654
MICA_243
Conserved hypothetical protein.
  
     0.614
MICA_338
Heparinase II/III-like family protein.
  
     0.608
MICA_1684
N-terminal double-transmembrane domain protein.
  
     0.559
MICA_925
Universal stress family protein.
  
     0.533
MICA_2232
Hypothetical protein.
  
     0.529
MICA_451
Polysaccharide biosynthesis/export family protein.
       0.511
MICA_1071
Putative uncharacterized protein.
  
     0.507
MICA_453
Hypothetical protein.
       0.505
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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