Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MICA_47Alanine racemase, N-terminal domain protein; Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis; Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family. (220 aa)    
Predicted Functional Partners:
MICA_937
Putative uncharacterized protein; Belongs to the multicopper oxidase YfiH/RL5 family.
  
  
 0.795
proC
Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline.
  
 0.752
MICA_45
Putative uncharacterized protein.
       0.746
MICA_46
Death-on-curing family protein.
       0.746
MICA_1820
Conserved hypothetical protein.
  
  
 0.698
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase family protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
    0.634
rpmC
Ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
   
    0.614
rplX
Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
   
    0.591
rpmJ
Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.
  
    0.584
MICA_44
Hypothetical protein.
       0.502
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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