Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MICA_528Hypothetical protein. (180 aa)    
Predicted Functional Partners:
MICA_529
Hypothetical protein.
     
 0.829
MICA_527
tadE-like family protein.
       0.822
cpaB
Flp pilus assembly protein CpaB.
  
    0.675
MICA_535
Hypothetical protein.
  
  
 0.636
MICA_537
Bacterial type II secretion system F domain protein.
  
  
 0.632
MICA_526
Hypothetical protein.
       0.493
MICA_538
Bacterial type II secretion system F domain protein.
  
    0.480
MICA_525
Hypothetical protein.
       0.478
MICA_536
Type II/IV secretion system family protein.
  
  
 0.457
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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