Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MICA_561Phage head morphogenesis, SPP1 gp7 family domain protein. (355 aa)    
Predicted Functional Partners:
MICA_563
Terminase-like family protein.
 
   
 0.876
MICA_564
Putative uncharacterized protein.
     
 0.812
MICA_562
Putative uncharacterized protein.
       0.797
MICA_546
Hypothetical protein.
   
   0.626
MICA_542
L-alanyl-D-glutamate peptidase.
 
     0.611
MICA_548
Tape measure domain protein.
 
   
 0.603
MICA_1989
DNA methylase family protein; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.597
MICA_560
Hypothetical protein.
       0.592
MICA_559
Hypothetical protein.
     
 0.547
MICA_553
Putative uncharacterized protein.
       0.473
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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