Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
MICA_65Magnesium chelatase, subunit ChlI family protein. (516 aa)    
Predicted Functional Partners:
dprA
DNA protecting protein DprA.
 
 0.869
comF
Competence protein F.
 
  
 0.809
MICA_1321
comEC/Rec2-related domain protein.
 
  
 0.776
MICA_63
Hypothetical protein.
       0.773
MICA_64
Hypothetical protein.
       0.773
def
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
      0.720
MICA_66
Hypothetical protein.
       0.620
MICA_62
Hypothetical protein.
       0.545
MICA_514
Conserved hypothetical protein; Belongs to the UPF0102 family.
 
  
 0.440
MICA_1783
DNA repair RadC family protein; Belongs to the UPF0758 family.
  
  
 0.408
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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