Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MICA_92Hemolysin-type calcium-binding repeat family protein. (559 aa)    
Predicted Functional Partners:
MICA_1876
Toxin secretion ATP-binding protein.
 
  
 0.829
MICA_110
Toxin secretion ATP-binding protein.
 
  
 0.827
MICA_1219
ABC transporter transmembrane region family protein.
 
  
 0.791
MICA_111
Type I secretion membrane fusion, HlyD family protein.
 
  
 0.784
MICA_1875
Type I secretion membrane fusion, HlyD family protein.
 
  
 0.783
MICA_1220
ABC transporter transmembrane region family protein.
 
  
 0.782
MICA_1221
Type I secretion membrane fusion, HlyD family protein.
 
  
 0.781
MICA_108
Type I secretion outer membrane, TolC family protein.
 
  
 0.731
MICA_107
Hemolysin-type calcium-binding repeat family protein.
 
  
0.685
MICA_1877
Outer membrane efflux family protein.
 
  
 0.651
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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