Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MICA_925Universal stress family protein. (190 aa)    
Predicted Functional Partners:
MICA_924
Transmembrane family protein.
 
     0.924
MICA_923
Conserved hypothetical protein.
 
   
 0.920
MICA_926
nifU-like domain protein.
     
 0.767
MICA_817
maeB.
  
  
 0.685
MICA_665
Conserved hypothetical protein.
  
     0.679
MICA_1648
Disulfide bond formation DsbB family protein.
  
     0.662
MICA_1762
methylated-DNA-[]-cysteine S-methyltransferase family protein.
  
  
 0.580
MICA_452
Conserved hypothetical protein.
  
     0.533
MICA_995
Ubiquinol-cytochrome C chaperone family protein.
  
     0.526
MICA_1929
His Kinase A domain protein.
  
  
 0.517
Your Current Organism:
Micavibrio aeruginosavorus ARL13
NCBI taxonomy Id: 856793
Other names: M. aeruginosavorus ARL-13, Micavibrio aeruginosavorus ARL-13, Micavibrio aeruginosavorus str. ARL-13, Micavibrio aeruginosavorus strain ARL-13
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