V4RH64_9ROSI protein (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4RH64_9ROSI

ATP-sulfurylase domain-containing protein. (174 aa)

Predicted Functional Partners:

V4UJ32_9ROSI

0.989

V4TY76_9ROSI

0.988

V4TYK4_9ROSI

0.916

V4UFN4_9ROSI

0.916

V4U5K8_9ROSI

0.828

V4UAH2_9ROSI

0.828

V4SWM5_9ROSI

0.813

V4TKZ0_9ROSI

0.787

V4SED1_9ROSI

0.734

V4U6N2_9ROSI

0.734

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4RH64_9ROSI	V4SED1_9ROSI	V4RH64	V4SED1	ATP-sulfurylase domain-containing protein.	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	0.734
V4RH64_9ROSI	V4SWM5_9ROSI	V4RH64	V4SWM5	ATP-sulfurylase domain-containing protein.	MoCF_biosynth domain-containing protein.	0.813
V4RH64_9ROSI	V4TKZ0_9ROSI	V4RH64	V4TKZ0	ATP-sulfurylase domain-containing protein.	TP_methylase domain-containing protein; Belongs to the precorrin methyltransferase family.	0.787
V4RH64_9ROSI	V4TY76_9ROSI	V4RH64	V4TY76	ATP-sulfurylase domain-containing protein.	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.988
V4RH64_9ROSI	V4TYK4_9ROSI	V4RH64	V4TYK4	ATP-sulfurylase domain-containing protein.	Thioredoxin domain-containing protein.	0.916
V4RH64_9ROSI	V4U5K8_9ROSI	V4RH64	V4U5K8	ATP-sulfurylase domain-containing protein.	Uncharacterized protein.	0.828
V4RH64_9ROSI	V4U6N2_9ROSI	V4RH64	V4U6N2	ATP-sulfurylase domain-containing protein.	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.	0.734
V4RH64_9ROSI	V4UAH2_9ROSI	V4RH64	V4UAH2	ATP-sulfurylase domain-containing protein.	Uncharacterized protein.	0.828
V4RH64_9ROSI	V4UFN4_9ROSI	V4RH64	V4UFN4	ATP-sulfurylase domain-containing protein.	Thioredoxin domain-containing protein.	0.916
V4RH64_9ROSI	V4UJ32_9ROSI	V4RH64	V4UJ32	ATP-sulfurylase domain-containing protein.	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.989
V4SED1_9ROSI	V4RH64_9ROSI	V4SED1	V4RH64	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	ATP-sulfurylase domain-containing protein.	0.734
V4SED1_9ROSI	V4SWM5_9ROSI	V4SED1	V4SWM5	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	MoCF_biosynth domain-containing protein.	0.695
V4SED1_9ROSI	V4TKZ0_9ROSI	V4SED1	V4TKZ0	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	TP_methylase domain-containing protein; Belongs to the precorrin methyltransferase family.	0.520
V4SED1_9ROSI	V4TY76_9ROSI	V4SED1	V4TY76	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.710
V4SED1_9ROSI	V4TYK4_9ROSI	V4SED1	V4TYK4	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Thioredoxin domain-containing protein.	0.767
V4SED1_9ROSI	V4U5K8_9ROSI	V4SED1	V4U5K8	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Uncharacterized protein.	0.440
V4SED1_9ROSI	V4UAH2_9ROSI	V4SED1	V4UAH2	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Uncharacterized protein.	0.440
V4SED1_9ROSI	V4UFN4_9ROSI	V4SED1	V4UFN4	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Thioredoxin domain-containing protein.	0.767
V4SED1_9ROSI	V4UJ32_9ROSI	V4SED1	V4UJ32	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial; Flavoprotein (FP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q).	Adenylyl-sulfate kinase; Catalyzes the synthesis of activated sulfate.	0.710
V4SWM5_9ROSI	V4RH64_9ROSI	V4SWM5	V4RH64	MoCF_biosynth domain-containing protein.	ATP-sulfurylase domain-containing protein.	0.813