STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
V4RJI1_9ROSIAutophagy protein 5; Required for autophagy. (360 aa)    
Predicted Functional Partners:
V4S7P6_9ROSI
Autophagy-related protein 3.
   
 0.999
V4SH13_9ROSI
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in cytoplasm to vacuole transport (Cvt) and autophagic vesicle formation. Belongs to the ATG12 family.
   
 0.999
V4VKJ3_9ROSI
WD_REPEATS_REGION domain-containing protein.
   
 0.999
V4U1R8_9ROSI
Uncharacterized protein.
    
 0.982
V4S164_9ROSI
Protein kinase domain-containing protein.
    
 
 0.928
V4SV79_9ROSI
Protein kinase domain-containing protein.
    
 
 0.928
V4UEZ3_9ROSI
Ubiquitin-like modifier-activating enzyme ATG7; E1-like activating enzyme involved in the 2 ubiquitin-like systems required for autophagy.
    
 0.914
V4S4V1_9ROSI
Protein kinase domain-containing protein.
    
 
 0.899
V4TC86_9ROSI
Protein kinase domain-containing protein.
    
 
 0.899
V4TP00_9ROSI
Uncharacterized protein; Belongs to the PI3/PI4-kinase family.
    
 0.889
Your Current Organism:
Citrus clementina
NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine
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