V4S8F3_9ROSI protein (Citrus clementina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

V4S8F3_9ROSI

Uncharacterized protein. (173 aa)

Predicted Functional Partners:

V4VKT1_9ROSI

0.897

V4T6Q6_9ROSI

0.754

V4VE22_9ROSI

0.739

V4TD07_9ROSI

0.728

V4SM89_9ROSI

0.722

V4TD26_9ROSI

0.704

V4SZ67_9ROSI

0.696

V4TBM3_9ROSI

0.692

V4TWE8_9ROSI

0.689

V4UTM1_9ROSI

0.683

Your Current Organism:

Citrus clementina

NCBI taxonomy Id: 85681
Other names: C. clementina, Citrus deliciosa x Citrus sinensis, clementine

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
V4S8F3_9ROSI	V4SM89_9ROSI	V4S8F3	V4SM89	Uncharacterized protein.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.722
V4S8F3_9ROSI	V4SZ67_9ROSI	V4S8F3	V4SZ67	Uncharacterized protein.	Uncharacterized protein.	0.696
V4S8F3_9ROSI	V4T6Q6_9ROSI	V4S8F3	V4T6Q6	Uncharacterized protein.	Uncharacterized protein.	0.754
V4S8F3_9ROSI	V4TBM3_9ROSI	V4S8F3	V4TBM3	Uncharacterized protein.	Uncharacterized protein.	0.692
V4S8F3_9ROSI	V4TD07_9ROSI	V4S8F3	V4TD07	Uncharacterized protein.	Uncharacterized protein.	0.728
V4S8F3_9ROSI	V4TD26_9ROSI	V4S8F3	V4TD26	Uncharacterized protein.	Uncharacterized protein.	0.704
V4S8F3_9ROSI	V4TWE8_9ROSI	V4S8F3	V4TWE8	Uncharacterized protein.	L51_S25_CI-B8 domain-containing protein.	0.689
V4S8F3_9ROSI	V4UTM1_9ROSI	V4S8F3	V4UTM1	Uncharacterized protein.	Uncharacterized protein.	0.683
V4S8F3_9ROSI	V4VE22_9ROSI	V4S8F3	V4VE22	Uncharacterized protein.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.739
V4S8F3_9ROSI	V4VKT1_9ROSI	V4S8F3	V4VKT1	Uncharacterized protein.	Uncharacterized protein.	0.897
V4SM89_9ROSI	V4S8F3_9ROSI	V4SM89	V4S8F3	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.722
V4SM89_9ROSI	V4SZ67_9ROSI	V4SM89	V4SZ67	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.957
V4SM89_9ROSI	V4T6Q6_9ROSI	V4SM89	V4T6Q6	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.993
V4SM89_9ROSI	V4TBM3_9ROSI	V4SM89	V4TBM3	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.999
V4SM89_9ROSI	V4TD07_9ROSI	V4SM89	V4TD07	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.954
V4SM89_9ROSI	V4TD26_9ROSI	V4SM89	V4TD26	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.985
V4SM89_9ROSI	V4TWE8_9ROSI	V4SM89	V4TWE8	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	L51_S25_CI-B8 domain-containing protein.	0.978
V4SM89_9ROSI	V4UTM1_9ROSI	V4SM89	V4UTM1	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	Uncharacterized protein.	0.999
V4SM89_9ROSI	V4VE22_9ROSI	V4SM89	V4VE22	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	S5 DRBM domain-containing protein; Belongs to the universal ribosomal protein uS5 family.	0.966
V4SZ67_9ROSI	V4S8F3_9ROSI	V4SZ67	V4S8F3	Uncharacterized protein.	Uncharacterized protein.	0.696